Hello,
I'm trying to display some FEAT statistics on a surface I created using Freesurfer using instructions from http://www.fmrib.ox.ac.uk/fsl/freesurfer/index.html. The automatic registration function reg-feat2anat seems to have failed and I'm not sure what I should do to re-orient the slices better. I've attached a picture, hopefully it will convey my problem.
Also, looking at the log files, I noticed the line
INFO: could not find /home/eleung1/freesurfer/fsl/etc/standard/avg152T1_brain.mat file for direction cosine info. INFO: use Analyze 7.5 hdr->hist.orient value: 0, transverse unflipped (default). INFO: if not valid, please provide the information in /home/eleung1/freesurfer/fsl/etc/standard/avg152T1_brain.mat file
Where do I get the file avg152T1_brain.mat?
Thanks for your help, Elaine
