hmm, that is a little strange. It is trying to find the preprocessed time series data. If it does not find it, it should generate it. Can you send me the full terminal output? doug
On 08/08/2013 01:15 PM, Sepide Movaghati wrote:
thank you for your respond. I create the subjectname file like the following: touch subjectname.txt echo "ZY" > $sessionDir/subjectname.txt
now I removed the ".txt", and now I am getting this new error:
outtop = /export01/data/sepid/subjects/ZY Extension format = nii.gz Error using MRIread (line 76) ERROR: cannot determine format of /export01/data/sepid/subjects/ZY/session1/bold/003/fmcpr.sm5.self.lh (MRIread)
Error in flac_customize (line 87) mri = MRIread(fstem,1);
Error in fast_selxavg3 (line 65) flac0 = flac_customize(flac0);
ERROR: fast_selxavg3() failed\n
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, August 07, 2013 6:41 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error when using selxavg3-sess in retinotopy analysis
It is having problems reading the subjectname file in the session folder. Look in there to see if there is something obviously wrong. Did you create it on a windows computer? doug
On 08/07/2013 04:16 PM, Sepide Movaghati wrote:
Hi,
I followed the steps for doing the retinotopy analysis. At the end I made my analysis as follows:
mkanalysis-sess -a Retinotopy_ZY -surface self lh -TR 2 -retinotopy 36-paradigm rtopy.par -fsd bold -fwhm 5
and then execute selxavg3-sess: selxavg3-sess –a Retinotopy_ZY –s session1
then I got this error which I do not how to solve it:
outtop = /export01/data/sepid/subjects/ZY Extension format = nii.gz Error using fscanf Invalid file identifier. Use fopen to generate a valid file identifier.
Error in flac_customize (line 47) flacnew.sourcesubject = fscanf(fp,'%s',1);
Error in fast_selxavg3 (line 65) flac0 = flac_customize(flac0);
ERROR: fast_selxavg3() failed\n
I would appreciate if you help me through this. Regards, Sepide
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