Hi,
I'm a beginner with freesurfer so I apologize if it's a trivial question.
I recently run recon-all with the -all on many subjects. As far as I can say, all the steps worked. However, the measures on the average brain (output of mris_preproc and friends) were not computed.
A colleague told me that he usually re-run recon-all with the -qcache flag to compute those. This seems to work but I don't understand if it is the recommended way to run mris_preproc and why it is not included with -all. Is it possible to get those measures in one call to recon-all?
I don't think that the issue comes from the data (e.g. that the failing of a step stops some branch of the pipeline) because it seems to run correctly with -qcache.
I haven't found any help on -qcache and the help of recon-all doesn't mention mris_preproc or mri_surf2surf.
Thanks in advance, Mathieu