Re: [Freesurfer] Segmentation comparison between FS5.3 and FS6beta

Hi Matthieu

I think 6.0 looks better overall, even in the beta that you have. The 5.3 segmentation looks like it is underestimating cerebellum and hippocampus to me.

cheers Bruce

On Tue, 15 Dec 2015, Matthieu Vanhoutte wrote:

Dear FS's experts,

I have tried the recon-all process on one subject with both FS v5.3 and v6_beta.

Although subcortical structures seems to be better segmented in v6_beta, I find that v6_beta over-segmented some other structures as cerebellum, hippocampus, ...

I will attached in the FileDrop my T1.mgz, and aparc.a2009s+aseg.mgz files for both freesurfer versions.

Could you please look at it and tell me what do you think about and advise me ?

Thank you !

Best regards, Matthieu