Hi Luis
sorry, the BA stuff is almost at the very end so you will need to run pretty much everything. We are down to 8 hours or so on modern multi-core CPUs (and even faster than that with 4-8 threads)
cheers Bruce On Tue, 22 Dec 2015, Luis Fernado Silva Castro de Araújo wrote:
Do I have to run recon-all entirely in order to extract volume for a few Brodmann's areas? Or is there a way of optimizing the process by striping it of any unneeded calculations?
It is taking 21h to analyze one subject.
Best, luis
2015-12-22 9:44 GMT+11:00 Douglas N Greve greve@nmr.mgh.harvard.edu: If you're doing anatomical analysis, then FSFAST is not needed (nor its directly structure). If you have an input anatomical volume in any format, then just run
recon-all -s yoursubjectname -all -i inputfile inputfile can include img but be warned that img does not have information about head orientation. This may cause a catastrophic failure (eg, the head is upside down). If the head is left-right reversed, then it probably won't fail but everything will be left-right reversed. don't say I did not warn you:) On 12/21/2015 05:37 PM, Luis Fernado Silva Castro de Araújo wrote: > > Dear Douglas, > > It's an anatomical analysis. Perhaps I misunderstood the requirement > for setting up the directories in the FSFAST for the recon-all command. > > If that is the case, it is then a matter of converting my img files > into mgz and run recon-all on them, am I right? > > Does the command recon-all also gives me volumes for specific > Brodmann's areas? Or do I have to run a labeling to that? > > > Thank you, > > luis > > > >
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