Hi,
I am trying to get voxel by voxel stats for fmajor on a threshold that's not the 0.2 default because when I looked at merged nii, fmajor is constructed correctly but on a different threshold. This is the command I used:
dmri_pathstats --intrk fmajor_PP_avg33_mni_bbr/path.pd.trk --dtbase ../dmri/dtifit --outvox new_fmajor --pthr 0.4
And I am getting in the terminal:
INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 940 streamlines as length outliers INFO: Have 1460 total streamlines (min/mean/max length: 75/101/117) INFO: Have 1460 non-truncated streamlines (min/mean/max length: 75/101/117) Segmentation fault (core dumped)
Am I running the command incorrectly?
Thank you, Lily