Re: [Freesurfer] Viewing color-map in freesurfer

Hi Rotem, Check out the -dti flag in freeview, pass it a vector and FA volume. You can display the colormap as vectors as well once everything is loaded up.

Example command: freeview -dti V1.nii.gz FA.nii.gz

-Louis

On Mon, 27 Jan 2014, Rotem Saar wrote:

Hi,

We followed the instructions on this link: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Diffusion#Masking to perform diffusion analysis and wanted to ask if there is an option to view the color-map in addition to the FA and ADC maps ? We want to make sure that left-right tracts are red, anterior-posterior are green ect... is this possible ?

Thanks Rotem Rotem Saar-Ashkenazy Department of Brain and Cognitive Science Ben Gurion University of the Negev Beer-Sheva 84105 Israel