Re: [Freesurfer] cortical recontruction error

yes, it will be too big to email. You can either use our ftp site or file drop

cheers Bruce On Mon, 25 Mar 2013, Claudia Dacquino wrote:

I'm sorry, I did mean the moderator of Freesurfer mailing list.

2013/3/25 Bruce Fischl fischl@nmr.mgh.harvard.edu you should be able to use our ftp site or file drop. Which administrator do you mean? On Mon, 25 Mar 2013, Claudia Dacquino wrote:

        I was trying, but the administrator did reject that, because the file is too big.

        2013/3/25 Claudia Dacquino <claudia.dacquino@gmail.com>
              Hi Bruce,
              I'll try to upload dataset.
              Thanks,
              Claudia

              2013/3/23 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
                    Hi Claudia

                    hmmm, someone else mentioned that mri_cc hangs for them but we've never seen it. If you upload
        your dataset
                    I'll see if we can replicate the problem
                    Bruce
                     On Fri, 22 Mar 2013, Claudia Dacquino wrote:

                          Dear Freesurfers,
                          I'm new and I'm starting using Freesurfer.
                          I'm having a problem with one subject, during the cortical reconstruction
                          (recon-all) the process stops at this stage:

                          mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz <subjid> 

                          at this point:

                          final transformation (x=128.0, yr=0.978, zr=0.153):
                           1.000  -0.003   0.017  -1.456;
                           0.003   1.000   0.000   8.654;
                          -0.017   0.000   1.000   25.201;
                           0.000   0.000   0.000   1.000;

                          without giving me any error message, it just stops.

                          Do you have some ideas for why it happens?

                          thanks to everyone,
                          Claudia





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