Hi,
And Mac users should wait for this instead of my suggested temporary fix earlier today.
Thanks, -Krish
On May 25, 2011, at 2:57 PM, Nick Schmansky wrote:
Hyunwoo (and Mac users),
We're going to have to post a new build of v5.1 later today which fixes this problem. In general, our goal is to have a Mac build that doesnt require special libraries, like libgfortran, but both our build and test machines had that lib for other reasons, so it slipped through the cracks during testing.
I'll post to the list when its ready. It will be identical in usage to the current Mac 5.1, just without the libgfortran dynamic lib dependency.
Nick
On Wed, 2011-05-25 at 16:30 +0000, Hyunwoo Lee wrote:
Dear FreeSurfer
Hello, I am currently trying the following freesurfer version: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0<ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0.dmg
and I noticed the following. During the first step ( recon-all -i invol1 -i invol2 -subjid your_subject_name ), the console displays the following messages:
Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 INFO: SUBJECTS_DIR is ******* Actual FREESURFER_HOME /Applications/freesurfer Darwin mrs.local 10.7.0 Darwin Kernel Version 10.7.0: Sat Jan 29 15:17:16 PST 2011; root:xnu-1504.9.37~1/RELEASE_I386 i386 dyld: Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Applications/freesurfer/bin/mri_robust_register Reason: image not found Trace/BPT trap dyld: Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Applications/freesurfer/bin/mri_robust_register Reason: image not found Trace/BPT trap
I confirmed that the above message does not appear on the linux version of FS5.1.
So, I was wondering if the above situation will cause any problem down the pipeline? I just kept it running for ~18 hours and it seems to be going fine (i.e. at least no problem until the "mris_ca_label" step)
Thank you very much, and I look forward to hearing from you.
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