Hi, I'm running the stable release v 3.0.1 for centos4 and I've had some problems with the segmentation. The main surface doesn't follow the wm-surface in some of the sulci, it rather 'jumps' across to the next gyri. (see picture) I've tried to edit the wm-surface and running autorecon2 again, but it doesn't work. Any ideas?
Thanks,
Martin Ystad University of Bergen, Norway.