Hi Ev,
recon-all.log says I ran recon-all stage 2 on Saturday, overwriting the good files from September. The subject I had really WANTED to edit at the time is already edited and fixed etc. My problem is with the overwritten files of the older subject. For this older subject, if I simply rerun stage2 and then stages 3&4, will that recalculate the correct surfaces from the (currently correct) mri/wm?
Thanks! Dahlia.
On Thu, 27 Oct 2005, Evelina Busa wrote:
Hi Dahlia
Since it seems unclear whether or not you edited the WM volume of this second subject whose surface files were overwritten, it might be helpful for you to first look at the recon-all.log text files in that subject's scripts/ directory, to see what commands you ran.
Probably what happened is that you recreated the surfaces unnecessarily, if the WM volume is correct. The files in mri/wm are from Sep12th, but the mri/filled volume files are new.
So back to the subject you *want* to edit/create surfaces for -- just make sure you likes its WM volume, and proceed with stages 3 & 4, if you haven't already.
I guess the main caveat here is that you're using the same version to recon all these subjects.
okay!
On Thu, 27 Oct 2005, Dahlia Sharon wrote:
Hi,
I overwrote several surface files (.inflated, .sulc, .curv, .smoothwm, .orig) by mistake while editing another subject. The volume in mri/wm/ is still the correct one. I should be able to run some of the recon steps again to get the correct surfaces back, but I don't want to do this without guidance so as not to make mistakes and start stepping over other files.
Can you tell me which commands to run to regenerate these surfaces correctly?
Thanks!!! Dahlia.
PS - the subject is ~dahlia/structurals/subj21_bay2
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer