Look at http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi if you want to compare all subjects, then you'll need to do this for all subjects not just the ones you want to flip
On 03/28/2016 02:30 PM, Ajay Kurani wrote:
Hello Freesurfer Experts,
I processed all of my brains through freesurfer 6.0 dev for Linux and warped the surfaces to standardized space. For a handful of subjects I want to perform a left right flip of the cortical thickness files (standardized space) for a group analysis. What is the best way to perform this in freesurfer? I have found a previous post referencing mris_reverse but there was a mention of it being off by a voxel when flipped. I wanted to see if this is still a concern with the latest version?
Is there a better way to achieve this goal without rerunning all of freesurfer such as a newer took, or is this the preferred method?
Thanks, Ajay
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