Re: [Freesurfer] average lGI for each subject's hemipshere

I think I got it, but it would be great if someone could tell me if this is wright:

mris_anatomical_stats -l lh.cortex.label -t lh.pial_lgi -log file.txt SUBJECT lh pial

thanks,

ines

On Tue, May 15, 2012 at 6:58 PM, Inês Violante inesviolante@gmail.com wrote:

Dear all,

How can I obtain an average lGI for each subject's hemipshere?

I've tried:

mris_anatomical_stats -mgz -f lh.lgi.stats -b -a ../label/lh.aparc.annot -c ../label/ lgi.annot.ctab -t  pial_lgi $SUBJECT lh

but I had the following error:

ERROR: stating file .../label/lh.aparc.annot

It calculates the lgi for each gyri label but it does not give average values for the hemisphere.

Thanks a lot.

ines