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Dear Freesurfer Developers,
Our study is using the longitudinal processing pipeline with version 6.0. We have one subject where there is a hyperintenisty in the right temporal lobe, and even after adding several control points and running recon-all, the white matter is still not fully being included in the surface. The coordinates are about [83, 163, 139].
For this particular subject, we are performing both white and grey matter edits starting at the cross-sectional. I've tried adding multiple rounds of control points; and also removed all the control points and tried filling in wm voxels, but I can never get that region to be fully included. I uploaded the subject about a week ago and was hoping that someone could take a look.
Best,
Rachel