Not sure. Try running
mri_convert 001.dcm deleteme.mgh
if it fails, capture the screen output and send it to the list
doug
On 01/06/2014 06:31 PM, Anders Olsen wrote:
Hello FreeSurfer team.
I am currently trying to learn the general usage of FreeSurfer and have run into problems with unpacking DICOM files.
When I run: unpacksdcmdir -src ~/freesurfer_dicom/buckner_data/tutorial_subjs/014-anon -targ ~/fs_subjects/014-anon -scanonly ~/fs_subjects/014-anon/scan.info
It completes and gives me the following output: 14 anon ok 256 256 128 001.dcm
I then try to unpack slice number 14 by running: unpacksdcmdir -src ~/freesurfer_dicom/buckner_data/tutorial_subjs/014-anon -targ ~/fs_subjects/014-anon -fsfast -run 14 bold nii f.nii
And it gives me the message: ERROR: reading ~/freesurfer_dicom/buckner_data/tutorial_subjs/014-anon/001.dcm tag 28 30
I have done md5sum buckner_data-tutorial_subjs.tar.gz and got the hash: 14618f42ffa6b21d5714f37e159357c4 which matches the md5sum in ftp://surfer.nmr.mgh.harvard.edu/pub/data/buckner_data-tutorial_subjs.md5sum.txt
Am I doing something wrong or is there a problem with the dcm files in the test data? --
Venlig hilsen | Kind regards Anders Dreisig Olsen anders.d.olsen@gmail.com mailto:anders.d.olsen@gmail.com
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