Re: [Freesurfer] Error in qdec longitudinal 5.1

Hi Natalia,

/TemplateSub1/surf/lh.thckness.fwhm10.fsaverage.mgh

there is an 'i' missing in thckness (but that might be just a typo).

also this is a regular thickness file. You cannot analyze the thickness in the base. That is meaningless, you need to select one of the other files in qdec, e.g. the spc. (there is a selection field).

Best, Martin

On Tue, 2011-07-26 at 14:01 +0200, Natalia h wrote:

Hi Martin,

I rechecked the .Qdecrc file, I put it as suggested on the tutorials. inside my qdec folder, I put a .Qdecrc file and contains the 4 lines. But still qdec cannot recognize the new types of files, am not sure why.

Thanks again Natalia

On Tue, Jul 26, 2011 at 11:25 AM, Natalia h natalia.himalaya@gmail.com wrote: Hi Martin,

    Thanks for the reply. my .qdecrc file is correct.
    What I tried to say is that,
    the error appear when I click analyze button. (qdec 1.4)
    Error in Analyize: Couln´t open
    file /TemplateSub1/surf/lh.thckness.fwhm10.fsaverage.mgh



    p.s TemplateSub1 is the -base name



    While I looked back into this folder, Indeed there is no such
    file
    What i have are 
    lh.long.thickness-spc-fwhm10.fsaverage.mgh
    lh.long.thickness-rate-fwhm10.fsaverage.mgh
    lh.long.thickness-pc1-fwhm10.fsaverage.mgh
    ....etc






    The qdec 1.4 seems to be not able to see these files...


    Regards
    Natalia


    On Mon, Jul 25, 2011 at 5:08 PM, Martin Reuter
    <mreuter@nmr.mgh.harvard.edu> wrote:
    > Hi Natalia,
    >
    > check your qdec/.QDECRC file, it needs to contain:
    >
    > MEASURE1 = long.thickness-avg
    > MEASURE2 = long.thickness-rate
    > MEASURE3 = long.thickness-pc1
    > MEASURE4 = long.thickness-spc
    >
    > probably you put a .spc instead of -spc
    >
    > Best, Martin
    >
    > On Fri, 2011-07-22 at 18:51 +0200, Natalia h wrote:
    >> Dear list,
    >>
    >> I got an error after following the newer version of the
    longitudinal
    >> stream 5.1.
    >>
    >> long_mris_slopes worked without problems for my data which
    was
    >> longtudinally processed in 4.5.
    >>
    >> I also split the qdec.table to the cross for being able to
    be loaded
    >> in qdec GUI.
    >>
    >> Somehow I got the error that the
    >> Templatesubxx/surf/xh.thickness.fwhm.xx.fsaverage.mgh.
    >>
    >> I went back to check inside the Templatesubxx/surf has only
    the
    >> xh.long.thickness-xxx.fwhmx.fsaverage.mgh
    >>
    >> Is there something I am missing?
    >>
    >> Thanks a lot for the help
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    >>
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