Is the size of the volume (row, cols, or slices) changing between the runs?
On 07/30/2014 04:18 PM, bbrent@bidmc.harvard.edu wrote:
Hi Doug,
I have been getting an error message when preprocessing data on 2 subjects in stable 4 (using the same command worked fine, however, with several others).
The command I ran was: preproc-sess -smout fmcsm6 -fwhm 6 -s Con7_self -df sesspar
The error message I get is pasted below.
Any suggestions about how to fix this would be much appreciated!
Thanks,
Ben
/autofs/space/tyra_001/users/gcoombs/self/subjects/Con7_self/bold 3dvolreg -verbose -dfile 003/fmc.mcdat -base 003/tmp.mc-afni2.6069/tempvol.nii.gz -prefix 003/tmp.mc-afni2.6069/outvol.nii.gz 003/tmp.mc-afni2.6069/invol.nii.gz ++ 3dvolreg: AFNI version=AFNI_2011_12_21_1014 (Aug 29 2012) [64-bit] ++ Authored by: RW Cox *+ WARNING: If you are performing spatial transformations on an oblique dset, such as 003/tmp.mc-afni2.6069/tempvol.nii.gz, or viewing/combining it with volumes of differing obliquity, you should consider running: 3dWarp -deoblique on this and other oblique datasets in the same session. See 3dWarp -help for details. ++ Oblique dataset:003/tmp.mc-afni2.6069/tempvol.nii.gz is 12.500000 degrees from plumb. ++ Reading in base dataset 003/tmp.mc-afni2.6069/tempvol.nii.gz ++ Oblique dataset:003/tmp.mc-afni2.6069/invol.nii.gz is 17.700005 degrees from plumb. ++ centers of base and input datasets are 26.86 mm apart ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same dimensions! Input: nx=64 ny=64 nz=33 Base: nx=256 ny=256 nz=128 ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same grid spacing! Input: dx= 2.969 dy= 2.969 dz= 3.000 Base: dx= 1.000 dy=-1.000 dz= 1.330 ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same orientation! Input: R-L A-P I-S Base: A-P S-I R-L ** FATAL ERROR: perhaps you could make your datasets match? ERROR: 3dvolreg Invalid null command. ERROR: mc-sess failed
Benjamin Brent, M.D., M.S. Massachusetts Mental Health Center 75 Fenwood Road, Room 618 Boston, MA 02115 617-754-1262
This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, any dissemination, distribution, copying, or use of this information is prohibited. If you have received this message in error, please permanently delete it and immediately notify the sender. Thank you.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer