make sure to add the following lines to your ~/matlab/startup.m
FSH = getenv('FREESURFER_HOME'); fshmatlab = sprintf('%s/matlab',FSH); path(path,fshmatlab); clear fshmatlab FSH;
doug
On 03/28/2013 03:48 PM, Mario Ortega wrote:
Hi Freesurfer group, Im attempting to use FS-FAST with resting BOLD data, and I have come across the following error. I tried changing files to non .gz extension, and still have this error..
$Id: fast_selxavg3.m,v 1.100 2011/03/02 16:14:38 greve Exp $ `fast_selxavg3' is a script from the file /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m `fast_ldanaflac' is a function from the file /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
outtop = /media/GOLDIN/FSFAST Extension format = nii.gz error: `MRIread' undefined near line 87 column 7 error: called from: error: /usr/local/freesurfer/fsfast/toolbox/flac_customize.m at line 87, column 5 error: /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m at line 65, column 7
When I attempt to use fast_selxavg3 standalone in octave, I get this error.
octave:1> fast_selxavg3; error: `sess' undefined near line 26 column 19 error: evaluating argument list element number 1 error: evaluating argument list element number 1 error: called from: error: /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m at line 26, column 8
thanks, Mario Ortega GS4 Washington University in St. Louis, Dept. of Neurology
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