This is normal. mri_ca_register can take 10 hours. To see if it is still running, open another terminal and type top, you should see all the running processes. Check http://surfer.nmr.mgh.harvard.edu/fswiki/recon_2dall to see approximate run times for each step. Mike
dasoscia@buffalo.edu wrote:
my terminal screen has been sitting on this for about an hour...is this normal or does it look like something is stuck?
**************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased switching integration type to fixed (done=0) pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change < tol 0.025, nsmall = 1 of 2 pct change < tol 0.025, nsmall = 2 of 2 switching integration type to fixed (done=1) rms increased - undoing step... pct change < tol 0.025, nsmall = 1 of 2 blurring input image with Gaussian with sigma=0.500... pct change decreased switching integration type to fixed (done=0) pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct change decreased pct chang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer