It can't find the freesurfer recon of your subject.
Your SUBJECTS_DIR is /Users/ahn/Downloads/9211720/ and your subject name is freesurfer. This means that you have saved the output from running recon-all on this subject's T1 scan at this location: /Users/ahn/Downloads/9211720/freesurfer/
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of 안성준(강남)영상의학과) AAHNG77@yuhs.ac Sent: Friday, May 15, 2020 4:11 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] error in TRACUAL : preprocessing step.
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Hello? Freesurfer developer.
I am attempting to run Tracula and follow the tutorial step using my own data but failed in 1st step, preprocessing. I modified configuration file fit to my pathway Command I used : trac-all -prep -c dmrirc.tutorial
I think the problem is in the last step,"priors" in the preprocessing. Error message is ERROR: fio_pushd: /Users/ahn/Downloads/9211720/Tracula/freesurfer/dlabel/mini
I tried to find the solution but couldn't .. Can you help me out ??
Thank you
Ahn
1) FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 2) Platform: macOS mojave 10.14.6
3) log file is attached