Dear Annchen, Do you get this error with a more recent stable version, e.g., 7.4.1? Cheers, /Eugenio
-- Juan Eugenio Iglesias http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Annchen Knodt annchen.knodt@duke.edu Date: Tuesday, September 3, 2024 at 1:57 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error in SegmentSubfieldsT1Longitudinal (line 2148)
External Email - Use Caution Hello,
I'm running the longitudinal hippocampal subfields module in ~300 individuals - it ran fine in most but with 8 i'm running into an error with the right hemisphere, which seems to be similar to the one posted in this unresolved threadhttps://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg74844.html, though my exact error is:
In an assignment A(:) = B, the number of elements in A and B must be the same.
Error in SegmentSubfieldsT1Longitudinal (line 2148)
My environment:
$ cat $FREESURFER_HOME/build-stamp.txt freesurfer-Linux-centos7_x86_64-dev-20171219-d5d1e74
$ cat /etc/os-release NAME="AlmaLinux" VERSION="9.4 (Seafoam Ocelot)" ID="almalinux" ID_LIKE="rhel centos fedora" VERSION_ID="9.4" PLATFORM_ID="platform:el9" ...
I can tell which of the 6 timepoints each of the 8 subjects are failing on, and i don't see anything particularly different about the input images from the failing tp, so i'm not sure what's going on or where to begin troubleshooting. I have tried simply re-running and gotten the same result. Attaching an example log file.
Any help is appreciated - thanks!!
Annchen