19 Feb
2019
19 Feb
'19
3:21 p.m.
Dear Freesurfers,
I have a 3D volume mask of cortical lesions with 8 different clusters (8 cortical lesions).
I projected this mask to the cortex and obtained a .mgh file with the command vol2surf:
mri_vol2surf --src $path_to_lesion/$subj/combined-$lesion.nii.gz --out $path_to_output/$subj/surf/$hemi".surf_combined-"$lesion".mgh" --projfrac-avg -0.1 1 0.05 --hemi $hemi --regheader $subj
Now I need to extract label files from this surface file, one label for each cluster, and then an annotation file summarizing all the label files.
How can I do this?
Thanks,
Vale