10 Aug
2017
10 Aug
'17
1:56 p.m.
Dear FreeSurfer experts,
I am trying to use the following command to merge the volume file of a template with original T1 orientation*, with a file like rawavg to get the full brain volume, but the following attached image gets produced and I am pretty sure, as a freesurfer novice, I am using a wrong command line;
mri_binarize --i rawavg.mgz --o scanner.template_angle.mgz --wm+vcsf
* (I have the native oriented version of this volume template as well, and I attached a photo of the template as well)
I would deeply appreciate if someone could help me correct my command line. Thank you all for the time and help
Idil
