Hi Doug,
I have been getting an error message when preprocessing data on 2 subjects in stable 4 (using the same command worked fine, however, with several others).
The command I ran was: preproc-sess -smout fmcsm6 -fwhm 6 -s Con7_self -df sesspar
The error message I get is pasted below.
Any suggestions about how to fix this would be much appreciated!
Thanks,
Ben
/autofs/space/tyra_001/users/gcoombs/self/subjects/Con7_self/bold 3dvolreg -verbose -dfile 003/fmc.mcdat -base 003/tmp.mc-afni2.6069/tempvol.nii.gz -prefix 003/tmp.mc-afni2.6069/outvol.nii.gz 003/tmp.mc-afni2.6069/invol.nii.gz ++ 3dvolreg: AFNI version=AFNI_2011_12_21_1014 (Aug 29 2012) [64-bit] ++ Authored by: RW Cox *+ WARNING: If you are performing spatial transformations on an oblique dset, such as 003/tmp.mc-afni2.6069/tempvol.nii.gz, or viewing/combining it with volumes of differing obliquity, you should consider running: 3dWarp -deoblique on this and other oblique datasets in the same session. See 3dWarp -help for details. ++ Oblique dataset:003/tmp.mc-afni2.6069/tempvol.nii.gz is 12.500000 degrees from plumb. ++ Reading in base dataset 003/tmp.mc-afni2.6069/tempvol.nii.gz ++ Oblique dataset:003/tmp.mc-afni2.6069/invol.nii.gz is 17.700005 degrees from plumb. ++ centers of base and input datasets are 26.86 mm apart ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same dimensions! Input: nx=64 ny=64 nz=33 Base: nx=256 ny=256 nz=128 ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same grid spacing! Input: dx= 2.969 dy= 2.969 dz= 3.000 Base: dx= 1.000 dy=-1.000 dz= 1.330 ** Input 003/tmp.mc-afni2.6069/invol.nii.gz and base 003/tmp.mc-afni2.6069/tempvol.nii.gz don't have same orientation! Input: R-L A-P I-S Base: A-P S-I R-L ** FATAL ERROR: perhaps you could make your datasets match? ERROR: 3dvolreg Invalid null command. ERROR: mc-sess failed
Benjamin Brent, M.D., M.S. Massachusetts Mental Health Center 75 Fenwood Road, Room 618 Boston, MA 02115 617-754-1262
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