Does that file exist? What is your $SUBJECTS_DIR? Can you send the full terminal output?
On 10/4/2020 2:05 AM, KN Qiao wrote:
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Hello FreeSurfer Developers, mri_vol2surf --mov $mask_dir/rest_brainmask.nii.gz --reg $reg_dir/rest2t1.dat --trgsubject fsaverage --interp trilin --projfrac 0.5 --hemi ${hemi} --o ${mask_dir}/mask.fsaverage.${hemi}.nii.gz --noreshape --cortex --surfreg sphere.reg Error: Loading label /Applications/freesurfer/subjects/fsaverage/label/lh.cortex.label Reading surface /Applications/freesurfer/subjects/freesurfer/surf/lh.white MRISread(/Applications/freesurfer/subjects/freesurfer/surf/lh.white): could not open file No such file or directory This problem happens again when I try to use this command on a server in my lab. I didn’t get why it attempted to get surface from /Applications/freesurfer/subjects/freesurfer Should it try /Applications/freesurfer/subjects/fsaverage as well? It can load label properly. Freesurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c and freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform: Darwin-OSX and CentOS6_x86_64
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