Dear freesurfer community,
I have started using freesurfer in order to visualize functional data of the cerebellum on a surface map. I was reading a lot in the freesurfer archives, and have found entries discussing or asking about a progress in order to properly segment and map highly resolved anatomical data (in my case 0.5x0.5x0.6). After some time now I managed to create surface maps, going stepwise through the recon-all scripts to improve cerebellar segmentation. But still, I struggle with parameter settings in autorecon-2. Do you have any suggestions on parameters which might have a crucial benefit in order to keep the folia of cerebellar cortex maintained?
However, I was also wondering, whether the experts can report something new at the 'automatic cerebellar segmentation' front.
I highly appreciate any advice!
Thanks, Judy Kipping