Hello,
I am trying to obtain estimates for the local gyrification index (LGI) using Freesurfer. I have tried to compute LGI via two different commands... "mris_compute_lgi --i lh.pial" and " recon-all -lgi -s subjectName." Both of these return the same error after running for a while...
.......... Saving label file /......../FS/subjects/test/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 69178 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69178 nlabel 9709 Saving label file /......../FS/subjects/test/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 68070 Finding path.............................................................................................Killed ERROR: mri_path2label --confillxfn lh.pial /......../FS/subjects/test/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input failed!
I've tried a couple of subjects and I get the error above. Would anyone please be able to offer suggestions regarding how to resolve this issue?
Many thanks for taking the time to read my inquiry.
Nick