The sudo password is brain2009
with this information you can succesfully install FSL using that procedure.
Cheers
PPJ
-- Enviado do meu celular Nokia E71 -----Msg original----- De: giacomo.mandru@gmail.com Enviado: 01/10/2009 07:00:09 Assunto: R:Re: Re: [Freesurfer] problem display tksurfer in vmware
Hi, I have another question: Can I install FSL on the Ubuntu of VirtualBox to work FS and FSL together? How? I follow the istruction of this site: http://neuro.debian.net/pkgs/fsl.html I add web site on source.list but I ottenied an error when I type: sudo apt-get update.
thank you for your patience! best wishes
Giacomo Mandruzzato
Il giorno 28/set/2009 14.52, Giacomo Mandruzzato giacomo.mandru@gmail.com ha scritto:
ok.thank for interest. I resolved my problem: -I installed Virtual Box -tksurfer: I need to DISABILITATED 3D accelerator graphic in configuration video of virtual box -qdec:reboot in kernel configuration, overwrite password for user 'freesurfer', and so I can create link for libtiff.so.4 named libtiff.so.3
Now run correctly, I have to wait about 1 second every rotation for tksurfer with subject bert , but I think it so good. thank you very much for your answer
2009/9/28 Pedro Paulo de Magalhães Oliveira Junior ppj@netfilter.com.br>
Have you installed the VirtualBox that comes from the FreeSurfer Wiki? VirtualBox 3.x?
Pedro Paulo de M. Oliveira Junior
Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.2 www.Netfilter.com.br --- Novo Netfilter Small Business
2009/9/28 Giacomo Mandruzzato giacomo.mandru@gmail.com>
Hi, now I have installed Virtual Box with freesurfer, but I have same problem with tksurfer and a library problem with qdec (it can't find libtiff.so.3 file, and in the folder I see only libtiff.so.3 file!) Giacomo
2009/9/26 Giacomo Mandruzzato giacomo.mandru@gmail.com>
thankyou for your help and your rapid answer.
I use bash and i set doublebufferflag=1 but the problem persists!
2009/9/26 Pedro Paulo de Magalhaes Oliveira Jr ppj@netfilter.com.br>
In csh use setenv doublebufferflag 1
In bash export doublebufferflag=1
--
Enviado do meu celular Nokia E71
-----Msg original-----
De: Giacomo Mandruzzato
Enviado: 26/09/2009 09:33:26
Para: ppj@netfilter.com.br
Assunto: Re: [Freesurfer] problem display tksurfer in vmware
Yes, I know but I have problem with VirtualBox in the first boot that I do!
Can I use freesurfer (and so tksurfer) with vmware? Or Is there any solution
for my problem?
thank you
2009/9/26 Pedro Paulo de Magalhaes Oliveira Jr ppj@netfilter.com.br>
Use the official FreeSurfer distribution for Virtualbox
--
Enviado do meu celular Nokia E71
-----Msg original-----
De: Giacomo Mandruzzato
Enviado: 26/09/2009 08:22:55
Para: freesurfer@nmr.mgh.harvard.edu
Assunto: [Freesurfer] problem display tksurfer in vmware
Hi,
I'm Giacomo Mandruzzato, a student of Bioengineering at Padova (DIE) and
I'm
working on my Thesis with Freesurfer (last version). I am using a
virtual
machine Vmware 2.5.3 with Cent0S 5.1 running FSL virtual disk in Windows
Vista Home premium,
I installed freesurfer and tkmedit e qdec run correctly but when run
tksurfer (ie tksurfer bert rh pial, like website suggests) display an
error :
[root@localhost ~]# tksurfer bert rh pial
surfer: current subjects dir: /usr/local/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /root
surfer: all rgb files written to /root
surfer: Reading header info from /usr/local/freesurfer/
subjects/bert/mri/T1.mgz
surfer: vertices=131860, faces=263716
WARNING: No colortable found!
surfer: single buffered window
surfer: tkoInitWindow(bert)
surfer: using interface /usr/local/freesurfer/lib/tcl/tksurfer.tcl
Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl
Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl
Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl
Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
%
Tksurfer open and I can see only a little piece of brain.
I have update the video card's driver and I tried to use another vm,
like
VirtualBox but I left the idea because I found some problem with boot of
it.
I have found a similar problem in internet, but without solution:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07389.html(I
am not using a Nvidia video card).
characteristic of my notebook:
Olidata , Intel core duo T2450 @ 2 x 2.00 Ghz,
Ram 2 GB, Windows Vista Home Premium 32bit SP2 updated.
Video card: Mobile Intel 945 Express Chipset Family
I apologize for bad English and little knowledge of Unix OS.
Please, if somebody can help I am grateful.
Best Regards,
Giacomo Mandruzzato
giacomo.mandru@gmail.com