External Email - Use Caution
Hello Bruce,
Ok, I have sent to you the subject via FileDrop if you want to take a look. Thanks.
Best regards,
El mié., 26 jun. 2019 a las 17:04, Bruce Fischl (fischl@nmr.mgh.harvard.edu) escribió:
Hi Miguel
depending on the lesions it may not be fixable (since they may change the topology of the cortex). If you upload the subject we will take a look, or you can try manually filling in the lesion in the wm.mgz (or marking it as lesion in the aseg.mgz) and seeing if that helps
cheers Bruce On Wed, 26 Jun 2019, Miguel Ángel Rivas Fernández wrote:
External Email - Use CautionI ran the recon-all in one subject and and this process was stopped
in the topology correction. In
particular during the
"CORRECTING DEFECT 36 (vertices=19847, convex hull=5892, v0=94733)".
I reviewed the lh.inflated.nofix and the lh.orig.nofix files in Freeview
and I noticed that the this
error would be located in the lh.inflated.nofix file. I am not
completely sure but I suspect that
this error may be due to the fact that there is a large amount of brain
lesion and this would
difficult the topology correction. How can I fix this problem?
Thanks in advance.
Best regards,
-- Miguel Ángel Rivas Fernández
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