Re: [Freesurfer] GLM Analysis: ROI (--label)

Hi Doug,

Thanks for the response. Here is my glmfit command:

mri_glmfit \ --y lh.22q_age.thickness.10.mgh \ --fsgd 22q_age.fsgd dods\ --C 22q_age_2.mtx \ --surf fsaverage lh \ --label lh.orbitofrontal.label --cortex \ --glmdir lh.22q_age_OFC.glmdir

And here is the error message:

gdfReadHeader: reading 22q_age.fsgd INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. Continuous Variable Means (all subjects) 0 age 12.7292 Class Means of each Continuous Variable 1 HC 12.8261 2 22Q 12.6400 INFO: gd2mtx_method is dods Reading source surface /u/home/FMRI/cbearden/data/22q/Analyses/sMRI/fsaverage/surf/lh.white ERROR: must specify GLM output dir [racheljo@login3 sMRI]$ --cortex \ ? --glmdir lh.22q_age_OFC.glmdir --cortex: Command not found.

Thanks! Rachel