Hi David
the -3T flag changes the target atlas to one built from 3T data, and also modifies some of the parameters that are passed to nu_correct, I believe to make it a bit more aggressive. I think the parameters we use are the ones suggested here: https://www.ncbi.nlm.nih.gov/pubmed/19732839 cheers Bruce
On Fri, 29 Jun 2018, David S Lee wrote:
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Hello Experts, I believe -3T Flag can be used with "recon-all" on scans collected by 3T scanners. I believe it performs intensity normalization to set white matter intensity threshold at 110. I am hoping to learn more about the flag option as it produces slightly better output for me.
Would you be able to guide me to a documentation on this -3T flag?
Thank you!
-- David S. Lee Associate Research Specialist Center for Healthy Minds University of Wisconsin - Madison (608) 890-1115