Hi Sherryse
what system are you running on? I saw this on an ubuntu system and it seemed to be a bug in one of the 3rd party libraries that we don't have access to. Can you try it on another machine, like a centos 6 one?
thanks Bruce
On Tue, 21 Jan 2014, Sherryse Corrow wrote:
We are doing some cortical flat mapping in FreeSurfer. We are following these instructions: http://openwetware.org/wiki/Beauchamp:FreeSurfer#Creating_Flat_Maps. We are able to create the flat map without a problem. However, just before we are able to do the last step "Save the patch by clicking File->Patch->Save Patch As" the process crashes and the flat map is lost.
In the terminal, we see this error:
surfer: filling (ctrl-c to cancel)...... done, 154370 vertices filled #Filling the uncut area was successful. surfer: ripped 12057 vertices tksurfer.bin: tnl/t_vertex.c:407: update_input_ptrs: Assertion `a[j].inputstride == vptr->stride' failed. Abort (core dumped)
So, the uncut area is filled and before we have time to click File, Save As, etc. . . the process crashes and we have to start the process over again.
Any suggestions? Thanks for your time. -- Sherryse Corrow, Ph.D. / Postdoctoral Fellow Human Vision and Eye Movement Lab Department of Ophthalmology & Visual Sciences UBC/VGH Eye Care Centre 360A-2550 Willow Street Vancouver, BC, V5Z 3N9 Tel: 604-875-4111 ext 67672 Cell: 604-315-6717 sherryse.corrow@eyecarecentre.org