Chacko,
The absolute path of the tal .xfm file is stored in the mgz file. If the data is moved, then the code, when it doesnt find the .xfm file in the absolute path, will perform a relative search, which was successful, as shown in the log. The log message could be improved in this respect.
Nick
On Thu, 2007-01-25 at 11:31 -0800, Chacko Cherian wrote:
Hello all, I also noticed that the program searches for the talairach transform in the wrong directory??could someone tell me why..
THanks
Chacko.
#@# processing subject 8/25 subj13... Reading /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/surf/rh.sphere.reg Talairach transform /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/AD/subj13/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/transforms/talairach.xfm Read /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/T1.mgz Surface area: 802.9 cm^2 Applying linear transform Talairach transform /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/AD/subj13/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/transforms/talairach.xfm
--- Chacko Cherian chacko_cherian@yahoo.com wrote:
Hello all,
Here's an error that i got while running group analysis on a couple of subjects...i checked the rh.orig file and the rh.sphere.reg and i could open both using tksurfer.
Reading
/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.sphere.reg
mrisReadTriangleFile(/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.orig):
surface doesn't match
/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.sphere.reg
No such file or directory mrisReadTriangleFile failed.
No such file or directory MRISreadOriginalProperties: could not read surface file orig No such file or directory mris_make_average_surface: could not read orig file for rh.
No such file or directory
Thanks in advance
Chacko.
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