Re: [Freesurfer] Extracting Yeo network volumes for individual subjects

Hi,

Here are two related postings from the list:

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg60854.html

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg64872.html

I hope they are helpful.

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Vyoma Shah Sent: Wednesday, January 25, 2023 2:42 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Extracting Yeo network volumes for individual subjects

External Email - Use Caution Hi,

How can I extract Yeo volumes by each network (for 7 or 17 network) for individual participants from FreeSurfer? I'm getting the same value for each participant, presumable because it's only pulling volumes from the template. Tried looking up the previous post with mri_surf2surf but am unable to successfully use this (or any other option) here.

I have freesurfer_x86_64-7.2.0 and have run recon-all for each participant ('/user/fsrecons/outputs/<subj_ID>'). I have the Yeo annotation files (but do not have subject specific ones) such as in 'user/fsrecons/subjects/outputs/fsaverage/label/lh.Yeo2011_7Networks_N1000.annot'. Each participant's aparc+aseg from the recon-all is in 'user/fsrecons/outputs/<subj_ID>/mri/aparc+aseg.mgz'

Thank you so much!