Can you run recon-all again with -debug as the first argument? Send me the command line and all the terminal output
On 7/9/2020 2:10 PM, Peka Savayan wrote:
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The file that I sent you is the recon-all.log file.
If copying file 'RB_all_2008-03-26.gca' from another FS version to directory ..../freesurfer-7.1.0/average will solve my problem?
On Thu, Jul 9, 2020 at 12:30 PM Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:
Can you send the recon-all.log file? On 7/9/2020 1:25 PM, Peka Savayan wrote:External Email - Use Caution I can open it. Can you? No permission required to my knowledge. On Thu, Jul 9, 2020 at 11:53 AM Douglas N. Greve <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote: Do you have read permission to it? On 7/8/2020 2:25 PM, Peka Savayan wrote:External Email - Use Caution Yes. On Wed, Jul 8, 2020 at 10:01 AM Douglas N. Greve <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote: Does that file exist? On 7/7/2020 8:59 AM, Peka Savayan wrote:External Email - Use Caution Dear experts, I try to run recon-all using FS 7.1.0 on a cluster with OS CentOS6. I got the recon-all.log error message: ERROR: cannot find /share/apps/freesurfer-7.1.0/average/RB_all_2008-03-26.gca Thanks for your help. Sincerely, Peka -- Peka Christova Savayan, PhD Assistant Prof. Dept. Neuroscience Univ. Minnesota Member Center Cognitive Sciences Univ. Minnesota Graduate program Center Cognitive Sciences Univ. Minnesota Research Physicist Brain Sciences Center VAHCS _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Peka Christova Savayan, PhD Assistant Prof. Dept. Neuroscience Univ. Minnesota Member Center Cognitive Sciences Univ. Minnesota Graduate program Center Cognitive Sciences Univ. Minnesota Research Physicist Brain Sciences Center VAHCS _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Peka Christova Savayan, PhD Assistant Prof. Dept. Neuroscience Univ. Minnesota Member Center Cognitive Sciences Univ. Minnesota Graduate program Center Cognitive Sciences Univ. Minnesota Research Physicist Brain Sciences Center VAHCS _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Peka Christova Savayan, PhD Assistant Prof. Dept. Neuroscience Univ. Minnesota Member Center Cognitive Sciences Univ. Minnesota Graduate program Center Cognitive Sciences Univ. Minnesota Research Physicist Brain Sciences Center VAHCS
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