External Email - Use Caution
Dear FreeSurfer experts, I have used "mri_annnotation2label" and "mri_label2vol" to change the parcellation output of FreeSurfer e.g the lh.aparc.annot into an ".nii" so i can see the parcels in Mricro. Now I can see the parcels just on the cortex not on the whole graymatter. The first question I have is that, is the parcellation done on the whole graymatter? And if yes, is there a way that I can see the volumes on the whole graymatter, not just on the cortex? I would be grateful if you could help me. best regards, Maedeh,