25 Feb
2020
25 Feb
'20
3:08 p.m.
External Email - Use Caution
Dear experts,
I began to test beta v7 version of FreeSurfer.
I noticed that some entries in recon-all-status.log seem missing (i.e. white and pial surface placement - there is entry Cortical Parc while following entry is Refine Pial Surfs).
Running
samseg` --t1w $s/mri/T1.mgz --t2w $s/mri/T2.mgz --s $s --refmode t1w exits with error in samseg2recon since command
set segvol = `find "$samsegdir" -iname "*crispSegmentation.nii" -print`
results with empty string set to segvol variable.
Antonin