[Freesurfer] Use Hippocampal segmentation sub-nuclei on other brain softwares

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Dear All,

I have been stuck on this issue for quite some time. What I am trying to do is running a segmentation on both amygdala and hippocampus, and then to look at the different activation of the segmented sub-fields of both structures during a social-emotional task. However, despite my efforts I have not been able to find a way for translating either the segmented output files to bring them in a format that can be used by R, FSL, or SPM. Is there anyone who might have an answer on how to do that? Or is there a function in freesurfer that provides the list of voxel coordinates per volume for each hippocampal and amygdala subfields?

Kind regards, Gregorio Borghi