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Hi Akansha,
Can you try mri_segstats with option '--slabel subject hemi full_path_to_label' - https://secure-web.cisco.com/1_6KUKydZKeVMdsBFIq45SL3FnNI0J0vK1Oc1OGxgUci9nd...
Best,
Yujing
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Akansha Mahesh Naraindas Sent: Thursday, June 29, 2023 3:47 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Extracting cortical thickness values for each subject using labels
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Hi I have made custom labels to use as ROIs,
I was wondering if there was any way to get thickness values at each vertex for a participant but just within the areas covered by specific label files,
So from the lh.thickness.fwhm0.fsaverage.mgh file, would I be able to extract thickness values from this file, but just within the region covered by aparc-rh-046.label ?
Do you know of a way to do this?
Thanks Akansha
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