Dear Nick Schmansky After finish autorecon1 step, I checked skull stripping results with command below. tkmedit N3 brainmask.mgz -aux T1.mgz
Then, I always face to an error message such as 'this may hart performance'. Am I also able to ignored it?
freeglut (tkmedit): Unable to create direct context rendering for window 'Medit: ' This may hurt performance. Reading /projects/fmri/fs/freesurfer/lib/tcl/tkm_common.tcl Reading /projects/fmri/fs/freesurfer/lib/tcl/tkm_wrappers.tcl
bsjeong
Nick Schmansky wrote:
Bum Seok,
The "Can't find the talairach xform..." message can be ignored. Recon- all will find that file by searching relative to the 'mri' directory. The message you see is a historical artifact from when the path to .xfm was hard-coded into the file.
Nick
On Thu, 2006-12-14 at 14:10 -0500, Bum Seok Jeong wrote:
During autorecon1, I find error message below during autorecon1, eventhough recon-all-status.log said 'recon-all finished without error ' Is it not considerable error message or important thing?
Thank you
bsjeong
Can't find the talairach xform 'spgr_nifti/N3/mri/transforms/talairach.xfm' Transform is not loaded into mri reading from orig.mgz... Talairach transform /spgr_nifti/N3/mri/transforms/talairach.xfm does not exist ... Cannot load tal xfm file /spgr_nifti/N3/mri/transforms/talairach.xfm TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to ./tmp.mri_nu_correct.mni.26912/nu0.mnc...
...........
#@# Talairach Thu Dec 14 14:00:02 EST 2006 /spgr_nifti/N3/mri
talairach --i nu.mgz --xfm transforms/talairach.auto.xfm
/spgr_nifti/N3/mri /freesurfer/bin//talairach --i nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach,v 1.4 2006/04/18 23:05:05 nicks Exp $ Linux b2_tm128.bwh.harvard.edu 2.6.17-1.2157_FC5 #1 SMP Tue Jul 11 22:53:56 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux Thu Dec 14 14:00:03 EST 2006 tmpdir is transforms/tmp.talairach.27507 /spgr_nifti/N3/mri mri_convert nu.mgz transforms/tmp.talairach.27507/src.mnc mri_convert nu.mgz transforms/tmp.talairach.27507/src.mnc Can't find the talairach xform '/spgr_nifti/N3/mri/transforms/talairach.xfm' Transform is not loaded into mri
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer