Hi,
From the wiki (http://www.freesurfer.net/fswiki/mri_ms_fitparms), I
can see that mri_ms_fitparms can accept and afi map. Can someone tell me what assumptions the -afi subcommand makes about the position of the afi map relative to the flash volumes? does it calculate everything in scanner coordinates, or do I need to register them to one another?
Thanks, D