Dear All,
I ran the following steps in a patient of mine at two time points nonhyper_24_06 and nonhyper_24_07
recon-all -autorecon1 -subjid nonhyper_24_06 recon-all -autorecon1 -subjid nonhyper_24_07 recon-all -autorecon2 -subjid nonhyper_24_06 recon-all -autorecon3 -subjid nonhyper_24_06 recon-all -autorecon2 -subjid nonhyper_24_07 recon-all -autorecon3 -subjid nonhyper_24_07
# template creation
recon-all -base nonhyper_24_templ -tp nonhyper_24_06 -tp nonhyper_24_07 -all
recon-all -long nonhyper_24_06 nonhyper_24_templ -all recon-all -long nonhyper_24_07 nonhyper_24_templ -all
When I tried to inspect my longitudinal result using freeview -v nonhyper_24_06.long.nonhyper_24_templ/mri/norm.mgz \ nonhyper_24_07.long.nonhyper_24_templ/mri/norm.mgz \ -f nonhyper_24_06.long.nonhyper_24_templ/surf/lh.pial:edgecolor=red \ nonhyper_24_06.long.nonhyper_24_templ/surf/lh.white:edgecolor=blue \ nonhyper_24_07.long.nonhyper_24_templ/surf/lh.pial:edgecolor=255,128,128 \ nonhyper_24_07.long.nonhyper_24_templ/surf/lh.white:edgecolor=lightblue
My norm images from two time points doesn't overlap (so does the pial and white surfaces from two points they appear on two distinct places on the freeview instead of being overlaped as shown in tutorial) when I load then it looks like there is some registration problem. I don't know where I made a mistake and how to correct for this. Any help will be greatly appreciated.
Thanks Venkat
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