Run mri_glmfit-sim using the Qdec output folder as the --glmdir and setting the thresholds and signs as you had them in qdec. The output will then be in a file called something like cache.th20.pos.y.ocn.dat. the cluster summary table will be in cache.th20.pos.sig.cluster.summary
On 11/07/2016 12:33 PM, Mihaela Stefan wrote:
Hello Freesurfers,
I am doing a group analysis using Qdec. I have a few significant clusters and I would like to plot one of them. Qdec does that if I click on 'Find Clusters and Goto Max' but I don't see options for the design of the plot. How can I export the thickness values from my cluster to reproduce the Qdec plot in another program?
Thank you! Mihaela
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