How does it look in tksurfer?
On 01/04/2016 03:29 PM, Mihaela Stefan wrote:
Hi Doug,
I am going back to this old email. I was able to brake the annot file into separate labels and I created a new annotation file with only the labels that I was interested in. However, the inflated surface disappears when I upload my own annotation in freeview. Only the labels are shown (see attachment). If I select "show outline only", then the inflated surface remains displayed. How can I keep the inflated surface displayed while I am loading the annotation file?
On a different note, I could upload multiple labels in the same time in freeview in the past. Now I can only upload one label at the time. I wonder if there is some setting that I am missing.
Thanks! Mihaela
On Wed, Oct 28, 2015 at 1:29 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Break up the annot into separate labels then recombine the ones you want into a new annotation. Use mri_annotation2label for the first step then mris_label2annot for the second. On 10/27/2015 02:35 PM, Mihaela Stefan wrote: > Hello Freesurfers, > > I would like to be able to display just a few parcels from the Desikan > atlas on the fsaverage inflated surface. For example, I would like to > display only the superiorfrontal and the posteriorcingulate. I tried > to recreate the parcels myself by drawing labels, but they don't look > pretty (see the attachment). > I traced the labels in qdec (based on the Annotation/Opacity tab) and > then I mapped them to fsaverage and visualized them with freeview. > > There's probably a better way to do that but I couldn't figure it out. > Can anyone help me with this? > > Thanks! > Mihaela > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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