I am just getting acquianted with the program, and I am running into some difficulties. I have a CD filled with MRI scans in AFNI format (.img, .mat, .BRIK, etc.) and I managed after some time to convert one of my .BRIK files to the .cor extention for Freesurfer. Now I am having trouble opening it. When I go to "open subjects" and try to get to where the file is, is lists a "T1" folder where the folder I have the file in should be, and it will not open. Where can I find this file to open it?...it is still on the CD (that is the location I gave when I converted the file), and also I copied all of the files to another folder on the computer, but when I tried to convert the file from that folder, it did not work. The files that I copied over all now have a pen with a cross through it next to the icon (read only maybe that means?)...I'm not sure because I'm very new with Linux. If anyone can help me, let me know.
Thanks, Dave