Re: [Freesurfer] mri_convert and GE dicom

How do you know it's the wrong orientation? Is the data local to the our network?

On Wed, 15 Nov 2006, David M Schnyer wrote:

I have been trying out the dev version of mri_convert on some GE dicom images. This is functional data. If I leave the orientation alone and just convert from Dicom to nifti then I get a timeseries volume in the wrong orientation. OK, so I add the flag --out_orientation RAS. Here I get a volume in the right orientation but the timeseries is gone. Now, it isn't really gone, in that the file is the correct size but FSL no longer sees it as a timeseries. Anyone dealt with something like this?

thanks,

david