Dear Freesurfer Mavens,
After running "recon-all -all" on a set of anatomical data, I wished to used the aparc.a2005s+aseg.mgz in a connectivity analysis pipeline to create some ROI masks. I was particularly interested in the subcortical regions contained in the a2005s scheme. However, the aparc.a2005s+aseg.mgz file was not created during the recon-all processing run. Is there a way to get the a2005s segmentation data?
Thanks for your help.
Best,
Mark
Senior Research Scientist Division of Gastroenterology and Hepatology Departmernt of Medicine Medical College of Wisconsin Milwaukee, WI