hmmm, looks like it is almost finished with mri_cc but doesn't complete. It usually only takes like 2 minutes for this process, so something must be wrong. Can you send me aseg.auto_noCCseg.mgz and norm.mgz for this subject? You can probably just email them.
cheers Bruce
On Mon, 17 Oct 2011, Irwin, William wrote:
Hi Bruce-
It is still running, but the recon-all.log as it stands is attached.
Thanks for your help.
Regards,
Wil
From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Sunday, October 16, 2011 6:27 PM To: Irwin, William Cc: freesurfer@nmr.mgh.harvard.edu; Irwin, William Subject: Re: [Freesurfer] Hanging or running at 'SubCort Seg'?
Hi Wil
Can you send us the full recon-all.log?
Cheers
Bruce
On Oct 16, 2011, at 3:53 PM, "Irwin, William" WIrwin@memory.ucsf.edu wrote:
Hi- I?m a bit stumped by a cased. The input volume looks very good. The first error was the Talairach transform would not complete, so I used the ?-notal-check? flag. As I have been focused on other things, I just let the job run, but after 2 weeks, it is stuck (I assume) as indicated. It is running on a fast processor with plenty of memory, so system constraints are not the issue #@# SubCort Seg Sun Oct 9 16:41:44 PDT 2011 mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca as eg.auto_noCCseg.mgz mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz ?lta /media/ClusterData2/data/localdata2/FreeSurfer/wirwin/wirwin_subject s/FT047-5/mri/transforms/cc_up.lta FT047-5 Any suggestions as to what might be the problem? Thanks much, Wil _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.