Re: [Freesurfer] help

what is your freeview command? Are you trying to view it on a surface?

On 04/07/2017 12:53 AM, Dilip Puri wrote:

Hi everyone,

when I used following command:

mri_binarize --i myfile.img --match 17 --binval -1 --o your.lefthippo.nii.gz

then I got output your.lefthippo.nii.gz file when I read this file using FREEVIEW then it completly different from original mask.

Thanks

Dilip​

On Thu, Apr 6, 2017 at 11:08 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:

Hi Dilip

yes, freesurfer will do this for you, although the labels will be
17 for
left hippocampus and 53 for right.

cheers
Bruce
On Thu, 6 Apr 2017, Dilip Puri wrote:

> Hi everyone,
>
> I am working on Hippocampus segmentation using Neural Networks
for that I need labeled images of Hippocampus corresponding to
original images.
>
> I am using OASIS Dataset for this. I want to generate labeled
images using FREESURFER. Is there any way to label each 3D co-ordinate
> HippoCampus -1
> Otherwise - 0
>
> Here are sample files link
>
> Kindly help me!
>
>
> Dilip Puri
> IIIT Vadodara
>
>
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