Dear Bruce,
Thanks for your reply. I checked the folder and did not find the file that was requested.
What I have in the average folder that has 'RB*.gca' are 'RB_all_2016-05-10.vc700.gca' and 'RB_all_withskull_2016-05-10.vc700.gca'. The other file in that folder is 'RB_all_2008-03-26.mni152.2mm.lta'.
Cheers, Hweeling
On Nov 21, 2017 18:05, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Hweeling
what is FREESURFER_HOME set to in the environment? Does that file exist? It is a standard part of our distribution
cheers Bruce
On Tue, 21 Nov 2017, Hwee Ling Lee wrote:
Dear all,
I have T1 images collected from the 7T MRI scanner.
I downloaded the most recent freesurfer software, and followed all instructions to install the software before using it.
I would like to segment the T1 data using its high resolution image, and also to segment the hippocampal subfields.
For command, I use this:
recon-all -all -s <subject name> -hires -i <subject dicom T1 image frame 1 location>
However, I get an error message:
cannot find $FREESURFER_HOME/average/RB_all_2008-03-26.gca
I'm not sure what I did wrong.
Also, how can I combine high resolution segmentation and hippocampal subfields segmentation?
Could someone please help?
Thanks.
Best regards, Hweeling
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